Description

Rhamphospermum nigrum (syns. Brassica nigra and Sinapis nigra), black mustard, is an annual plant cultivated for its dark-brown-to-black seeds, which are commonly used as a spice. It is native to cooler regions of North Africa, temperate regions of Europe, and parts of Asia.

Whole Genomes

Whole Genome Sequences & Annotations for Brassica nigra

• Brassica nigra Ni100-LR

S genes

Brassica nigra Ni100-LR S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTp Hit	BLASTp %ID
SRK	B7	58094628	50427380-50428652,50427181-50427291, 50426962-50427098,50426681-50426891, 50426352-50426589,50426122-50426272, 50425739-50426041	SRKb|AB052756.1_prot_BAB40987.1	39.6
SCR	B7	58094628	50230099-50230168,50230264-50230484	XP_006301215.1	68.18

Downloads

The Brassica nigra S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Brassica_nigra

Publications

Yang J, Liu D, Wang X, Ji C, Cheng F, Liu B, Hu Z, Chen S, Pental D, Ju Y, Yao P, Li X, Xie K, Zhang J, Wang J, Liu F, Ma W, Shopan J, Zheng H, Mackenzie SA, Zhang M. The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection. Nat Genet. 2016 Oct;48(10):1225-32. doi: 10.1038/s41588-018-0227-4.

Perumal S, Koh CS, Jin L, Buchwaldt M, Higgins EE, Zheng C, Sankoff D, Robinson SJ, Kagale S, Navabi ZK, Tang L, Horner KN, He Z, Bancroft I, Chalhoub B, Sharpe AG, Parkin IAP. A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome. Nat Plants. 2020 Aug;6(8):929-941. doi: 10.1038/s41477-020-0735-y.

Yang T, Cai B, Jia Z, Wang Y, Wang J, King GJ, Ge X, Li Z. Sinapis genomes provide insights into whole-genome triplication and divergence patterns within tribe Brassiceae. Plant J. 2023 Jan;113(2):246-261. doi: 10.1111/tpj.16043.