Antirrhinum linkianum
Overview
| Genus | Antirrhinum |
| Species | linkianum |
| Common Name | - |
| Abbreviation | A. linkianum |
| Ploidy | Diploid |
| Chromosome Number | 2n=2x=16 |
| Genome Size | 520 Mb |
| Genome Assemblies | 1 |
| Cross Reference | NCBI taxon: 102601 |
Organism Image
Description
Antirrhinum linkianum is a species of eudicot in the family Plantaginaceae (speedwell family).
Whole Genomes
Whole Genome Sequences & Annotations for Antirrhinum linkianum
S genes
Antirrhinum linkianum gwh_assembly S genes
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF32ψ | GWHCAYD00000045 | 2807702 | 189550-188415 | Antirrhinum hispanicum, S7-SLF32 | 99.3 | - |
| SLF31 | GWHCAYD00000045 | 2807702 | 195010-193859 | Antirrhinum hispanicum, S7-SLF31 | 99.0 | F-box domain |
| SLF30 | GWHCAYD00000045 | 2807702 | 305810-304605 | Antirrhinum hispanicum, S8-SLF30 | 99.1 | F-box domain |
| SLF29 | GWHCAYD00000045 | 2807702 | 308934-307810 | Antirrhinum hispanicum, S7-SLF29 | 98.8 | F-box domain |
| SLF28 | GWHCAYD00000045 | 2807702 | 386020-384746 | Antirrhinum hispanicum, S7-SLF28 | 98.9 | F-box domain |
| SLF27 | GWHCAYD00000045 | 2807702 | 399454-398321 | Antirrhinum hispanicum, S7-SLF27 | 98.4 | F-box domain |
| SLF24 | GWHCAYD00000045 | 2807702 | 418512-419768 | Antirrhinum hispanicum, S8-SLF24 | 95.6 | F-box domain |
| SLF23 | GWHCAYD00000045 | 2807702 | 424825-425991 | Antirrhinum hispanicum, S8-SLF23 | 97.9 | F-box domain |
| SLF22 | GWHCAYD00000045 | 2807702 | 441967-443100 | Antirrhinum hispanicum, S8-SLF22 | 95.9 | F-box domain |
| SLF21 | GWHCAYD00000045 | 2807702 | 463036-464214 | Antirrhinum hispanicum, S8-SLF21 | 96.2 | F-box domain |
| SLF18ψ | GWHCAYD00000045 | 2807702 | 754527-755662 | Antirrhinum hispanicum, S8-SLF18 | 97.3 | - |
| SLF16 | GWHCAYD00000045 | 2807702 | 799899-798769 | Antirrhinum hispanicum, S8-SLF16 | 98.9 | F-box domain |
| SLF15 | GWHCAYD00000045 | 2807702 | 815733-816869 | Antirrhinum hispanicum, S8-SLF15 | 97.1 | F-box domain |
| SLF14 | GWHCAYD00000045 | 2807702 | 866368-867522 | Antirrhinum hispanicum, S8-SLF14 | 95.8 | F-box domain |
| SLF13 | GWHCAYD00000045 | 2807702 | 895561-894413 | Antirrhinum hispanicum, S7-SLF13 | 98.3 | F-box domain |
| SLF-S5 | GWHCAYD00000045 | 2807702 | 900215-899088 | Antirrhinum hispanicum AJ515536.1, SLF-S5 | 98.8 | F-box domain |
| SLF-S4A | GWHCAYD00000045 | 2807702 | 923320-922115 | Antirrhinum hispanicum AJ515534.1, SLF-S4A | 98.0 | F-box domain |
| SLF29-2 | GWHCAYD00000045 | 2807702 | 932654-933778 | Antirrhinum hispanicum, S7-SLF29 | 97.3 | F-box domain |
| SLF9 | GWHCAYD00000045 | 2807702 | 944916-943729 | Antirrhinum hispanicum, S7-SLF9 | 98.0 | F-box domain |
| SLF8 | GWHCAYD00000045 | 2807702 | 954060-955256 | Antirrhinum hispanicum, S7-SLF8 | 99.2 | F-box domain |
| SLF6 | GWHCAYD00000045 | 2807702 | 1001502-1000309 | Antirrhinum hispanicum, S7-SLF6 | 97.2 | F-box domain |
| SLF6-2 | GWHCAYD00000045 | 2807702 | 1031643-1030402 | Antirrhinum hispanicum, S8-SLF6 | 98.4 | F-box domain |
| SLF4 | GWHCAYD00000045 | 2807702 | 1104023-1102830 | Antirrhinum hispanicum, S8-SLF4 | 98.0 | F-box domain |
| SLF3ψ | GWHCAYD00000045 | 2807702 | 1116735-1115607 | Antirrhinum hispanicum, S8-SLF3 | 97.3 | - |
| SLF2 | GWHCAYD00000045 | 2807702 | 1120354-1119194 | Antirrhinum hispanicum, S8-SLF2 | 97.5 | F-box domain |
| SLF5 | GWHCAYD00000045 | 2807702 | 1144861-1143722 | Antirrhinum hispanicum, S7-SLF5 | 97.5 | F-box domain |
| SLF19 | GWHCAYD00000242 | 572752 | 164535-165728 | Antirrhinum hispanicum, S8-SLF19 | 97.5 | F-box domain |
| SLF18 | GWHCAYD00000242 | 572752 | 197002-198156 | Antirrhinum hispanicum, S7-SLF18 | 99.0 | F-box domain |
| SLF17 | GWHCAYD00000242 | 572752 | 321928-320798 | Antirrhinum hispanicum, S7-SLF17 | 98.5 | F-box domain |
| SLF15ψ | GWHCAYD00000242 | 572752 | 354706-355841 | Antirrhinum hispanicum, S8-SLF15 | 99.3 | - |
| SLF15-2 | GWHCAYD00000242 | 572752 | 391639-390380 | Antirrhinum hispanicum, S7-SLF15 | 99.0 | F-box domain |
| SLF14-2 | GWHCAYD00000242 | 572752 | 431184-432338 | Antirrhinum hispanicum, S8-SLF14 | 99.7 | F-box domain |
| SLF13-2 | GWHCAYD00000242 | 572752 | 450562-449414 | Antirrhinum hispanicum, S7-SLF13 | 97.6 | F-box domain |
| SLF12ψ | GWHCAYD00000242 | 572752 | 460345-459214 | Antirrhinum hispanicum, S8-SLF12 | 98.4 | - |
| SLF10 | GWHCAYD00000242 | 572752 | 492086-493210 | Antirrhinum hispanicum, S8-SLF10 | 98.8 | F-box domain |
| SLF9-2 | GWHCAYD00000242 | 572752 | 504437-503250 | Antirrhinum hispanicum, S7-SLF9 | 98.0 | F-box domain |
| SLF8-2 | GWHCAYD00000242 | 572752 | 509473-510669 | Antirrhinum hispanicum, S7-SLF8 | 98.8 | F-box domain |
| SLF7 | GWHCAYD00000242 | 572752 | 518486-519676 | Antirrhinum hispanicum, S7-SLF7 | 99.5 | F-box domain |
| SLF21ψ | GWHCAYD00000328 | 275945 | 3859-2680 | Antirrhinum hispanicum, S7-SLF21 | 98.6 | - |
| SLF22-2 | GWHCAYD00000328 | 275945 | 57923-56790 | Antirrhinum hispanicum, S8-SLF22 | 96.5 | F-box domain |
| SLF23-2 | GWHCAYD00000328 | 275945 | 115951-114785 | Antirrhinum hispanicum, S8-SLF23 | 97.9 | F-box domain |
| SLF27ψ | GWHCAYD00000328 | 275945 | 150562-151694 | Antirrhinum hispanicum, S7-SLF27 | 97.8 | - |
| SLF28ψ | GWHCAYD00000328 | 275945 | 200466-201738 | Antirrhinum hispanicum, S7-SLF28 | 97.3 | - |
| SLF6ψ | GWHCAYD00000555 | 45445 | 35189-36378 | Antirrhinum hispanicum, S7-SLF6 | 97.5 | - |
| SLF21-2 | GWHCAYD00000621 | 17529 | 5575-4397 | Antirrhinum hispanicum, S7-SLF21 | 98.2 | F-box domain |
Downloads
The Antirrhinum linkianum S gene sequences are available in FASTA format.
| CDS and Protein (FASTA file) | S-gene_Antirrhinum_linkianum |
Publications
Zhu S, Zhang Y, Copsy L, Han Q, Zheng D, Coen E, Xue Y. The Snapdragon Genomes Reveal the Evolutionary Dynamics of the S-Locus Supergene. Mol Biol Evol. 2023 Apr 4;40(4):msad080. https://doi.org/10.1093/molbev/msad080.
© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences