Description

The oat (Avena sativa), sometimes called the common oat, is a species of cereal grain grown for its seed, which is known by the same name (usually in the plural, unlike other cereals and pseudocereals). Oats are used for human consumption as oatmeal, including as steel cut oats or rolled oats. They appear to have been domesticated as a secondary crop as their seeds resembled those of other cereals closely enough for them to be included by early cultivators. Oats are a nutrient-rich food associated with lower blood cholesterol and reduced risk of human heart disease when consumed regularly. One of the most common uses of oats is as livestock feed; the crop can also be grown as groundcover and ploughed in as a green manure.

Whole Genomes

Whole Genome Sequences & Annotations for Avena sativa

• Avena sativa sang

S genes

Avena sativa sang S genes

Query	Chromosome	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-S1	chr1D	469999753	394040607-394042205	LpSDUF247-I_chromosome1	80	DUF247
DUF247I-S2	chr3D	454437434	406180491-406182089	LpSDUF247-I_chromosome1	80	DUF247
DUF247I-S3	chr7A	490396672	378560622-37859873	LpSDUF247-I_chromosome1	77	DUF247
DUF247II-S1	chr1D	469999753	393891412-393893019	LpSDUF247-II_chromosome1	76	DUF247
DUF247II-S2	chr3D	454437434	406261754-406263490	LpSDUF247-II_chromosome1	83	DUF247
DUF247II-S3Ψ	chr7A	490396672	37812492-37812761	LpSDUF247-II_chromosome1	74	DUF247
HPS10-S1	chr1D	469999753	394039159-394039300, 394039380-394039516	LpsS_chromosome1	58	-
HPS10-S2	chr3D	454437434	406187267-406187404, 406187484-406187604	LpsS_chromosome1	73	-
HPS10-S3	chr7A	490396672	37863107-37863246, 37863967-37863472	LpsS_chromosome1	63	-
DUF247I-Z1Ψ	chr2A	469027344	389478719-389481280	LpZDUF247-I_chromosome2	62	DUF247
DUF247I-Z2	chr2C	538887009	510562165-510563745	LpZDUF247-I_chromosome2	72	DUF247
DUF247II-Z1	chr2C	538887009	510632398-510634083	LpZDUF247-II_chromosome2	71	DUF247
DUF247II-Z2	chr2D	516880681	177120056-177121732	LpZDUF247-II_chromosome2	48	DUF247
HPS10-Z1	chr2A	469027344	389532037-389532146, 389532426-389532579	AerianthaHPS10-Z	55	-

Downloads

The Avena sativa S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Avena_sativa

Publications

Kamal N, Tsardakas Renhuldt N, Bentzer J, Gundlach H, Haberer G, Juhász A, Lux T, Bose U, Tye-Din JA, Lang D, van Gessel N, Reski R, Fu YB, Spégel P, Ceplitis A, Himmelbach A, Waters AJ, Bekele WA, Colgrave ML, Hansson M, Stein N, Mayer KFX, Jellen EN, Maughan PJ, Tinker NA, Mascher M, Olsson O, Spannagl M, Sirijovski N. The mosaic oat genome gives insights into a uniquely healthy cereal crop. Nature. 2022 Jun;606(7912):113-119. doi: 10.1038/s41586-022-04732-y.

Peng Y, Yan H, Guo L, Deng C, Wang C, Wang Y, Kang L, Zhou P, Yu K, Dong X, Liu X, Sun Z, Peng Y, Zhao J, Deng D, Xu Y, Li Y, Jiang Q, Li Y, Wei L, Wang J, Ma J, Hao M, Li W, Kang H, Peng Z, Liu D, Jia J, Zheng Y, Ma T, Wei Y, Lu F, Ren C. Reference genome assemblies reveal the origin and evolution of allohexaploid oat. Nat Genet. 2022 Aug;54(8):1248-1258. doi: 10.1038/s41588-022-01127-7.

NCBI BioProject PRJEB44810. Chromosome-scale assembly of oat (Avena sativa) cultivar Sang.