Description

Echinochloa colonum, commonly known as jungle rice, wild rice, deccan grass, jharua or awnless barnyard grass, is a type of wild grass originating from tropical Asia. It was formerly classified as a species of Panicum. It is the wild ancestor of the cultivated cereal crop Echinochloa frumentacea, sawa millet. Some taxonomists treat the two taxa as one species, in which case the domesticated forms may also be referred to as E. colonum.

Whole Genomes

Whole Genome Sequences & Annotations for Echinochloa colona

• Echinochloa colona eco_v1

S genes

Echinochloa colona eco_v1 S genes

Query	Chromosome	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-S	GWHBDNQ00000017	42512179	18441003-18442667	Shybrid	62	DUF247
DUF247II-SΨ	GWHBDNQ00000017	42512179	18990254-18990520	Shybrid	58	DUF247
HPS10-S	GWHBDNQ00000017	42512179	18985832-18985970, 18986120-18986223	ShybridS1	63	-
DUF247I-Z1	GWHBDNQ00000010	28853634	26630623-26632200	Shybrid	57	DUF247
DUF247I-Z2	GWHBDNQ00000020	39951026	37154008-37155516	Shybrid	60	DUF247
DUF247I-Z3Ψ	GWHBDNQ00000027	32271771	29984378-29984857	Shybrid	57	DUF247
DUF247II-Z1	GWHBDNQ00000020	39951026	37161388-37163046	Shybrid	55	DUF247
DUF247II-Z2	GWHBDNQ00000027	32271771	29992371-29994059	Shybrid	57	DUF247
HPS10-Z1	GWHBDNQ00000010	28853634	26629108-26629217, 26629320-26629476	SspontaneumZ2	36	-
HPS10-Z2	GWHBDNQ00000020	39951026	37159381-37159484, 37159596-37159722	Orufipogon	35	-

Downloads

The Echinochloa colona S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Echinochloa_colona

Publications

Wu D, Shen E, Jiang B, Feng Y, Tang W, Lao S, Jia L, Lin HY, Xie L, Weng X, Dong C, Qian Q, Lin F, Xu H, Lu H, Cutti L, Chen H, Deng S, Guo L, Chuah TS, Song BK, Scarabel L, Qiu J, Zhu QH, Yu Q, Timko MP, Yamaguchi H, Merotto A Jr, Qiu Y, Olsen KM, Fan L, Ye CY. Genomic insights into the evolution of Echinochloa species as weed and orphan crop. Nat Commun. 2022 Feb 3;13(1):689. doi: 10.1038/s41467-022-28359-9.