Description

Oryza coarctata (2n = 4X = 48, KKLL) is an allotetraploid, undomesticated relative of rice and the only species in the genus Oryza with tolerance to high salinity and submergence.

Whole Genomes

Whole Genome Sequences & Annotations for Oryza coarctata

• Oryza coarctata Oco

S genes

Oryza coarctata Oco S genes

Query	Chromosome	Size(bp)	Coordinates	tBLASTn Hit	tBLASTn %ID	Domain
DUF247I-S1Ψ	GWHCBHR00000009	23765581	4727597-4728520	Olongistaminata	80	DUF247
DUF247I-S2Ψ	GWHCBHR00000010	23414180	5599897-5599947	Olongistaminata	64	DUF247
HPS10-S1	GWHCBHR00000009	23765581	4723566-4723707, 4723782-4723888	LpsS_chromosome1	42	-
HPS10-S2	GWHCBHR00000010	23414180	5602105-5602229, 5602322-5602394	Olongistaminata	47	-
DUF247I-Z	GWHCBHR00000007	23112565	20674591-20676168	LpZDUF247-I_chromosome2	61	DUF247
DUF247II-Z	GWHCBHR00000007	23112565	20688482-20690182	Scereale	67	DUF247
HPS10-Z1	GWHCBHR00000007	23112565	20681595-20681757, 20681830-20681882	Telongatum	38	-
HPS10-Z2	GWHCBHR00000008	22654099	20165556-20165665, 20165760-20165922	LpsZ_chromosome2	40	-

Downloads

The Oryza coarctata S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Oryza_coarctata

Publications

Zhao H, Wang W, Yang Y, Wang Z, Sun J, Yuan K, Rabbi SMHA, Khanam M, Kabir MS, Seraj ZI, Rahman MS, Zhang Z. A high-quality chromosome-level wild rice genome of Oryza coarctata. Sci Data. 2023 Oct 14;10(1):701. doi: 10.1038/s41597-023-02594-1.