Analysis Name | Primula vulgaris Slocus Assembly & Annotation |
Sequencing technology | Illumia, Sanger sequencing |
Assembly method | - |
Release Date | 2016-12-02 |
Li J, Cocker JM, Wright J, Webster MA, McMullan M, Dyer S, Swarbreck D, Caccamo M, Oosterhout CV, Gilmartin PM. Genetic architecture and evolution of the S locus supergene in Primula vulgaris. Nat Plants. 2016 Dec 2;2(12):16188. doi: 10.1038/nplants.2016.188.
AbstractDarwin's studies on heterostyly in Primula described two floral morphs, pin and thrum, with reciprocal anther and stigma heights that promote insect-mediated cross-pollination. This key innovation evolved independently in several angiosperm families. Subsequent studies on heterostyly in Primula contributed to the foundation of modern genetic theory and the neo-Darwinian synthesis. The established genetic model for Primula heterostyly involves a diallelic S locus comprising several genes, with rare recombination events that result in self-fertile homostyle flowers with anthers and stigma at the same height. Here we reveal the S locus supergene as a tightly linked cluster of thrum-specific genes that are absent in pins. We show that thrums are hemizygous not heterozygous for the S locus, which suggests that homostyles do not arise by recombination between S locus haplotypes as previously proposed. Duplication of a floral homeotic gene 51.7 million years (Myr) ago, followed by its neofunctionalization, created the current S locus assemblage which led to floral heteromorphy in Primula. Our findings provide new insights into the structure, function and evolution of this archetypal supergene.
Assembly statistics
Genome size (bp) | 455881 |
Scaffold sequence No. | 1 |
The Primula vulgaris Slocus Assembly file is available in FASTA format.
Downloads
Chromosomes (FASTA file) | s_loc_lh.fa.gz |
The Primula vulgaris Slocus genome gene prediction files are not available.
Downloads
Genes (GFF3 file) | - |
CDS sequences (FASTA file) | - |
Protein sequences (FASTA file) | - |
Functional annotation for the Primula vulgaris Slocus is not available.
Downloads
Domain from InterProScan | - |
Summary
Gene name | Scaffold | Start | End |
CcmT | s_loc_lh1_assembly | 101482 | 101949 |
GloT | s_loc_lh1_assembly | 137687 | 112874 |
CypT | s_loc_lh1_assembly | 309600 | 241498 |
PumT | s_loc_lh1_assembly | 331312 | 327038 |
KfbT | s_loc_lh1_assembly | 344619 | 345641 |
Primula vulgaris S genes Nucleotide
Primula vulgaris S genes Protein