Fragaria chiloensis Genome_v1.0 Assembly & Annotation

Overview

Analysis Name Fragaria chiloensis Genome_v1.0 Assembly & Annotation
Sequencing technology dddddddddd
Assembly method dddddddddd
Release Date dddddddddd
Reference Publication(s)

Cauret CMS, Mortimer SME, Roberti MC, Ashman TL, Liston A. Chromosome-scale assembly with a phased sex-determining region resolves features of early Z and W chromosome differentiation in a wild octoploid strawberry. G3 (Bethesda). 2022 Jul 29;12(8):jkac139. doi: 10.1093/g3journal/jkac139.

Abstract

Assembly statistics

Total Scaffold Length (bp)
Number of Scaffolds (bp)
Min. Number of Scaffolds containing half of assembly (L50)
Shortest Scaffold from L50 set (N50)
Assembly level Chromosome

Assembly

The Fragaria chiloensis Genome_v1.0 Assembly file is available in FASTA format.

Downloads

Chromosomes (FASTA file) DNA

Gene Predictions

The Fragaria chiloensis Genome_v1.0 genome gene prediction files are available in GFF3 and FASTA format.

Downloads

Genes (GFF3 file) GFF
CDS sequences (FASTA file) CDS
Protein sequences (FASTA file) PRO

Functional Analysis

Functional annotation for the Fragaria chiloensis Genome_v1.0 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).

Downloads

Domain from InterProScan TSV
© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences