Description

Fragaria nipponica is a species of wild strawberry native to the western side of the Japanese island of Honshū, with a variety Fragaria nipponica var. yakusimensis on Yakushima. Some botanists treat it as a synonym of Fragaria yezoensis.

All strawberries have a base haploid count of 7 chromosomes. Fragaria nipponica is diploid, having 2 pairs of these chromosomes for a total of 14 chromosomes.

Fragaria nipponica, particularly var. yakusimensis, is cultivated in Japan for its edible fruit.

Whole Genomes

Whole Genome Sequences & Annotations for Fragaria nipponica

• Fragaria nipponica KIB CAS Genome v1.0

S genes

Fragaria nipponica KIB CAS Genome v1.0 S genes

Query	Chr	Size(bp)	Coordinates	Domain
S-RNase-1	chr6	54378020	462761-462686,462452-462283,446586-446137	Ribonuclease T2 family
SLF-1	chr6	54378020	245773-246966	F-box,F-box associated
SLF-2	chr6	54378020	250477-251667	F-box,F-box associated
SLF-3	chr6	54378020	621751-622722	F-box,F-box associated
SLF-4	chr6	54378020	626398-627633	F-box,F-box associated
SLF-5	chr6	54378020	5582911-5583554,5586572-5587145	F-box,F-box associated
SLF-6	chr6	54378020	6036965-6038233	F-box,F-box associated
SLF-7	chr6	54378020	6086425-6087660	F-box,F-box associated
SLF-8	chr6	54378020	6197359-6197652,6197798-6197875,6197968-6198006,6199311-6200000	F-box
S-RNase-2	chr6	54378020	5873152-5873227,5877156-5877352,5878571-5879041	Ribonuclease T2 family

Downloads

The Fragaria S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Fragaria

Publications

Jin X, Du H, Zhu C, Wan H, Liu F, Ruan J, Mower JP, Zhu A. Haplotype-resolved genomes of wild octoploid progenitors illuminate genomic diversifications from wild relatives to cultivated strawberry. Nat Plants. 2023 Aug;9(8):1252-1266. doi: 10.1038/s41477-023-01473-2.