Prunus armeniaca ASM2042406v1 Assembly & Annotation

Overview

Analysis Name Prunus armeniaca ASM2042406v1 Assembly & Annotation
Sequencing technology ???
Assembly method ???
Release Date ???
Reference Publication(s)

Zhang Q, Zhang D, Yu K, Ji J, Liu N, Zhang Y, Xu M, Zhang YJ, Ma X, Liu S, Sun WH, Yu X, Hu W, Lan SR, Liu ZJ, Liu W. Frequent germplasm exchanges drive the high genetic diversity of Chinese-cultivated common apricot germplasm. Hortic Res. 2021 Oct 1;8(1):215. doi: 10.1038/s41438-021-00650-8.

Abstract

???

Assembly statistics

Genome sizeh251.3 Mb
Total ungapped lengthh251.2 Mb
Number of chromosomesh8
Number of scaffoldsh228
Scaffold N50h31 Mb
Scaffold L50h4
Number of contigsh507
Contig N50h3.2 Mb
Contig L50h24
GC percenth37.5
Genome coverageh294.0x
Assembly levelhChromosome

Assembly

The Prunus armeniaca ASM2042406v1 Assembly file is available in FASTA format.

Downloads

Chromosomes (FASTA file) DNA

Gene Predictions

The Prunus armeniaca ASM2042406v1 genome gene prediction files are available in GFF3 and FASTA format.

Downloads

Genes (GFF3 file) GFF
CDS sequences (FASTA file) CDS
Protein sequences (FASTA file) PRO

Functional Analysis

Functional annotation for the Prunus armeniaca ASM2042406v1 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).

Downloads

Domain from InterProScan TSV
© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences