| Analysis Name | Pyrus x bretschneideri ASM4128383v1 Assembly & Annotation |
| Sequencing technology | PacBio Revio; Oxford Nanopore |
| Assembly method | HiFiasm v. 0.19.6 |
| Release Date | 2024-08-15 |
NCBI BioProject PRJNA1073018. Pyrus x bretschneideri cultivar:Hongxiangsu Genome sequencing.
Assembly statistics
| Genome size | 511 Mb |
| Number of chromosomes | 17 |
| Number of scaffolds | 71 |
| Scaffold N50 | 29.5 Mb |
| Scaffold L50 | 8 |
| Number of contigs | 71 |
| Contig N50 | 29.5 Mb |
| Contig L50 | 8 |
| GC percent | 37.5 |
| Assembly level | Chromosome |
The Pyrus x bretschneideri ASM4128383v1 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_041283835.1_ASM4128383v1_genomic.fna.gz |
The Pyrus x bretschneideri ASM4128383v1 genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Pyrus x bretschneideri ASM4128383v1 is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Chr | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| PbrSFBB.XVI | CM083751.1 | 29508640 | 26246635-26247822 | ON918627.1, PbrSFBB.XVI-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.XIV | CM083751.1 | 29508640 | 26252981-26254201 | ON918625.1, PbrSFBB.XIV-S17 | 99.918 | F-box; F_box_assoc |
| PbrSFBB.XIII | CM083751.1 | 29508640 | 26267524-26268705 | ON918624.1, PbrSFBB.XIII-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.VI | CM083751.1 | 29508640 | 26319853-26321031 | ON918617.1, PbrSFBB.VI-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.IX | CM083751.1 | 29508640 | 26389695-26390897 | ON918620.1, PbrSFBB.IX-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.XII | CM083751.1 | 29508640 | 26447550-26448722 | ON918623.1, PbrSFBB.XII-S17 | 99.915 | F-box; F_box_assoc |
| PbrSFBB.XI | CM083751.1 | 29508640 | 26495676-26496860 | ON918622.1, PbrSFBB.XI-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.X | CM083751.1 | 29508640 | 26522903-26524084 | ON918621.1, PbrSFBB.X-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.I | CM083751.1 | 29508640 | 26568748-26567546 | ON918613.1, PbrSFBB.I-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.XV | CM083751.1 | 29508640 | 26615319-26614105 | ON918626.1, PbrSFBB.XV-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.IV | CM083751.1 | 29508640 | 26633136-26631952 | ON918616.1, PbrSFBB.IV-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.II | CM083751.1 | 29508640 | 26723230-26722037 | ON918614.1, PbrSFBB.II-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.III | CM083751.1 | 29508640 | 26850894-26849713 | ON918615.1, PbrSFBB.III-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.XX | CM083751.1 | 29508640 | 27127216-27126035 | ON918630.1, PbrSFBB.XX-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.VII | CM083751.1 | 29508640 | 27232329-27231157 | ON918618.1, PbrSFBB.VII-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.XIX | CM083751.1 | 29508640 | 27256584-27255352 | ON918629.1, PbrSFBB.XIX-S17 | 100 | F-box; F_box_assoc |
| PbrSFBB.XVIII | CM083751.1 | 29508640 | 27269098-27267914 | ON918628.1, PbrSFBB.XVIII-S17 | 99.916 | F-box; F_box_assoc |
| PbrSFBB.VIII | CM083751.1 | 29508640 | 27310514-27309324 | ON918619.1, PbrSFBB.VIII-S17 | 100 | F-box; F_box_assoc |
| S-RNase | CM083751.1 | 29508640 | 27073489-27073238,27073096-27072662 | DQ494676.1, S34-RNase | 100 | RNase_T2 |
Pyrus x bretschneideri ASM4128383v1 S genes Nucleotide
Pyrus x bretschneideri ASM4128383v1 S genes Protein