Description

Rubus idaeus (raspberry, also called red raspberry or occasionally European red raspberry to distinguish it from other raspberry species) is a red-fruited species of Rubus native to Europe and northern Asia and commonly cultivated in other temperate regions.

Whole Genomes

Whole Genome Sequences & Annotations for Rubus idaeus

• Rubus idaeus RiMJ

S genes

Rubus idaeus S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain

Downloads

The Rubus idaeus S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Rubus_idaeus

Publications

Davik J, Røen D, Lysøe E, Buti M, Rossman S, Alsheikh M, Aiden EL, Dudchenko O, Sargent DJ. A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.). PLoS One. 2022 Mar 16;17(3):e0265096. doi: 10.1371/journal.pone.0265096.

Price RJ, Davik J, Fernandéz Fernandéz F, Bates HJ, Lynn S, Nellist CF, Buti M, Røen D, Šurbanovski N, Alsheikh M, Harrison RJ, Sargent DJ. Chromosome-scale genome sequence assemblies of the 'Autumn Bliss' and 'Malling Jewel' cultivars of the highly heterozygous red raspberry (Rubus idaeus L.) derived from long-read Oxford Nanopore sequence data. PLoS One. 2023 May 16;18(5):e0285756. doi: 10.1371/journal.pone.0285756.

Zhou J, Li M, Li Y, Xiao Y, Luo X, Gao S, Ma Z, Sadowski N, Timp W, Dardick C, Callahan A, Mount SM, Liu Z. Comparison of red raspberry and wild strawberry fruits reveals mechanisms of fruit type specification. Plant Physiol. 2023 Sep 22;193(2):1016-1035. doi: 10.1093/plphys/kiad409.