Description

Citrus australasica, the Australian finger lime or caviar lime, is a thorny understorey shrub or small tree of lowland subtropical rainforest and rainforest in the coastal border region of Queensland and New South Wales, Australia.

It has edible fruits which are under development as a commercially sold crop.

Whole Genomes

Whole Genome Sequences & Annotations for Citrus australasica

• Citrus australasica ASM2961858v1

S genes

Citrus australasica ASM2961858v1 S genes

Query	Scaffold	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF2	Alt_Scaffold_7	28177809	1411-2505	PP719841.1, S30-SLF2	90.884	F-box; F_box_assoc
SLF3	Alt_Scaffold_7	28177809	33085-34197	PP719842.1, S30-SLF3	90.999	F-box; F_box_assoc
SLF4	Alt_Scaffold_7	28177809	49580-50701	ASM2964120v1, SLF4	90.761	F-box; F_box_assoc
SLF5	Alt_Scaffold_7	28177809	96570-97694	ASM2964120v1, SLF5	90.4	F-box; F_box_assoc
SLF6	Alt_Scaffold_7	28177809	117428-116292	ASM2964120v1, SLF6	91.733	F-box; F_box_assoc
SLF7	Alt_Scaffold_7	28177809	126214-125084	PP719832.1, S2-SLF7	93.015	F-box; F_box_assoc
SLF9	Alt_Scaffold_7	28177809	129740-130882	ASM2964120v1, SLF9	93.438	F-box; F_box_assoc
SLF9-2	Alt_Scaffold_7	28177809	139305-140447	ASM2964120v1, SLF9	93.438	F-box; F_box_assoc
SLF9-3	Alt_Scaffold_7	28177809	1022861-1024003	ASM2964120v1, SLF9	93.613	F-box; F_box_assoc
SLF8	Alt_Scaffold_7	28177809	1026548-1027687	ASM2964120v1, SLF8-2	98.333	F-box; F_box_assoc
SLF10	Alt_Scaffold_7	28177809	1046585-1047730	ASM2964120v1, SLF10	99.302	F-box; F_box_assoc
SLF11	Alt_Scaffold_7	28177809	1050194-1049019	ASM2964120v1, SLF11	98.639	F-box; F_box_assoc
SLF12	Alt_Scaffold_7	28177809	1054345-1053224	ASM2964120v1, SLF12	99.109	F-box; F_box_assoc
SLF7-2	Alt_Scaffold_7	28177809	1136162-1137292	PP719832.1, S2-SLF7	92.573	F-box; F_box_assoc
SLF7-3	Alt_Scaffold_7	28177809	1140052-1141182	ASM2964120v1, SLF7-2	98.851	F-box; F_box_assoc
SLF5-2	Alt_Scaffold_7	28177809	1153631-1154755	ASM2964120v1, SLF5-2	99.289	F-box; F_box_assoc
SLF6-2	Alt_Scaffold_7	28177809	1179333-1178194	ASM2964120v1, SLF6-2	99.123	F-box; F_box_assoc
SLF4-2	Alt_Scaffold_7	28177809	1208654-1209760	ASM2964120v1, SLF4-2	99.368	F-box; F_box_assoc
SLF3-2	Alt_Scaffold_7	28177809	1235647-1234532	ASM2964120v1, SLF3-2	99.283	F-box; F_box_assoc
SLF2-2	Alt_Scaffold_7	28177809	1260321-1259209	ASM2964120v1, SLF2-3	98.473	F-box; F_box_assoc
SLF1	Alt_Scaffold_7	28177809	1263406-1262306	PB533_SCSK_HAP2, SLF1	98.547	F-box; F_box_assoc
SLF12-2	Pri_Scaffold_7	28448369	907109-908230	PP719852.1, S30-SLF12	99.109	F-box; F_box_assoc
SLF11-2ψ	Pri_Scaffold_7	28448369	911245-912418	ASM2964120v1, SLF11	98.895	-
SLF10-2	Pri_Scaffold_7	28448369	914827-913682	ASM2964120v1, SLF10	99.302	F-box; F_box_assoc
SLF8-2	Pri_Scaffold_7	28448369	933596-932457	ASM2964120v1, SLF8-2	97.544	F-box; F_box_assoc
SLF9-4	Pri_Scaffold_7	28448369	937254-936112	ASM2964120v1, SLF9-2	92.826	F-box; F_box_assoc
SLF7-4	Pri_Scaffold_7	28448369	939691-940821	PP719832.1, S2-SLF7	92.573	F-box; F_box_assoc
SLF7-5	Pri_Scaffold_7	28448369	943581-944711	PP719832.1, S2-SLF7	90.805	F-box; F_box_assoc
SLF5-3	Pri_Scaffold_7	28448369	957160-958284	ASM2964120v1, SLF5-2	99.289	F-box; F_box_assoc
SLF6-3	Pri_Scaffold_7	28448369	982858-981719	ASM2964120v1, SLF6-2	99.123	F-box; F_box_assoc
SLF4-3	Pri_Scaffold_7	28448369	1012179-1013285	ASM2964120v1, SLF4-2	99.368	F-box; F_box_assoc
SLF3-3	Pri_Scaffold_7	28448369	1039172-1038057	ASM2964120v1, SLF3-2	99.283	F-box; F_box_assoc
SLF2-3	Pri_Scaffold_7	28448369	1063846-1062734	ASM2964120v1, SLF2-3	98.473	F-box; F_box_assoc
S-RNase-1	Alt_Scaffold_7	28177809	87340-87576, 87699-88127	MN652912.1, SmR-RNase	99.1	Ribonuclease T2
S-RNase-2	Alt_Scaffold_7	28177809	1211181-1210939, 1210814-1210380	OR359662.1, S37-RNase	98.8	Ribonuclease T2
S-RNase-3	Pri_Scaffold_7	28448369	1014706-1014464, 1014339-1013905	OR359662.1, S37-RNase	98.8	Ribonuclease T2

Downloads

The Citrus australasica S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Citrus_australasica

Publications

Huang Y, He J, Xu Y, Zheng W, Wang S, Chen P, Zeng B, Yang S, Jiang X, Liu Z, Wang L, Wang X, Liu S, Lu Z, Liu Z, Yu H, Yue J, Gao J, Zhou X, Long C, Zeng X, Guo YJ, Zhang WF, Xie Z, Li C, Ma Z, Jiao W, Zhang F, Larkin RM, Krueger RR, Smith MW, Ming R, Deng X, Xu Q. Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. Nat Genet. 2023 Nov;55(11):1964-1975. doi: 10.1038/s41588-023-01516-6.

Nakandala U, Furtado A, Masouleh AK, Smith MW, Williams DC, Henry RJ. The genome of Citrus australasica reveals disease resistance and other species specific genes. BMC Plant Biol. 2024 Apr 10;24(1):260. doi: 10.1186/s12870-024-04988-8.

Singh K, Huff M, Liu J, Park J-W, Rickman T, Keremane M, Krueger RR, Kunta M, Roose ML, Dardick C, et al. Chromosome-Scale, De Novo, Phased Genome Assemblies of Three Australian Limes: Citrus australasica, C. inodora, and C. glauca. Plants. 2024; 13(11):1460. https://doi.org/10.3390/plants13111460