| Analysis Name | Citrus hongheensis v1.0 Assembly & Annotation |
| Sequencing technology | Oxford Nanopore |
| Assembly method | SMARTdenovo v. default |
| Release Date | 2023-07-13 |
NCBI BioProject PRJNA783764. Citrus hongheensis Genome sequencing and assembly.
Assembly statistics
| Genome size | 354.6 Mb |
| Total ungapped length | 354.6 Mb |
| Number of contigs | 651 |
| Contig N50 | 2.6 Mb |
| Contig L50 | 38 |
| GC percent | 34.5 |
| Genome coverage | 40.0x |
| Assembly level | Contig |
The Citrus hongheensis v1.0 Assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) | HH.v1.0.genome.fa.gz |
The Citrus hongheensis v1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
| Genes (GFF3 file) | HH.v1.0.gene.model.gff3.gz |
| CDS sequences (FASTA file) | HH.v1.0.CDS.fa.gz |
| Protein sequences (FASTA file) | HH.v1.0.protein.fa.gz |
Functional annotation for the Citrus hongheensis v1.0 is available for download below. The proteins were analyzed using InterProScan to assign InterPro domains(Pfam).
Downloads
| Domain from InterProScan | Citrus_hongheensis_v1.0.Pfam.tsv.gz |
Summary
| Query | Contig | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF1 | contig70 | 1386136 | 228420-229520 | ASM2964120v1, SLF1 | 98.91 | F-box; F_box_assoc |
| SLF2 | contig70 | 1386136 | 236892-238016 | ASM2964120v1, SLF2 | 99.733 | F-box; F_box_assoc |
| SLF3 | contig70 | 1386136 | 242937-244055 | ASM2964120v1, SLF3 | 99.821 | F-box; F_box_assoc |
| SLF2-2 | contig70 | 1386136 | 254225-255340 | ASM2964120v1, SLF2-2 | 99.373 | F-box; F_box_assoc |
| SLF4 | contig70 | 1386136 | 284600-285706 | ASM2964120v1, SLF4 | 99.639 | F-box; F_box_assoc |
| SLF5 | contig70 | 1386136 | 331961-333085 | ASM2964120v1, SLF5 | 99.733 | F-box; F_box_assoc |
| SLF6 | contig70 | 1386136 | 362318-363451 | ASM2964120v1, SLF6 | 99.824 | F-box; F_box_assoc |
| SLF7 | contig70 | 1386136 | 390091-388964 | ASM2964120v1, SLF7 | 99.911 | F-box; F_box_assoc |
| SLF9 | contig70 | 1386136 | 400123-401265 | ASM2964120v1, SLF9 | 99.563 | F-box; F_box_assoc |
| SLF8 | contig70 | 1386136 | 403680-404819 | ASM2964120v1, SLF8 | 99.737 | F-box; F_box_assoc |
| SLF10 | contig70 | 1386136 | 428303-429448 | ASM2964120v1, SLF10 | 99.738 | F-box; F_box_assoc |
| SLF11 | contig70 | 1386136 | 431895-430720 | ASM2964120v1, SLF11 | 99.065 | F-box; F_box_assoc |
| SLF12 | contig70 | 1386136 | 436038-434917 | ASM2964120v1, SLF12 | 99.376 | F-box; F_box_assoc |
| SLF13 | contig70 | 1386136 | 452925-454001 | ASM2964120v1, SLF13 | 98.7 | F-box; F_box_assoc |
| SLF12-2ψ | contig630 | 237731 | 6312-7417 | ASM2964120v1, SLF12 | 91.608 | - |
| SLF11-2ψ | contig630 | 237731 | 10454-11628 | ASM2964120v1, SLF11 | 98.046 | - |
| SLF10-2ψ | contig630 | 237731 | 14031-12889 | ASM2964120v1, SLF10 | 99.215 | - |
| SLF8-2 | contig630 | 237731 | 53563-52418 | ASM2964120v1, SLF8 | 89.762 | F-box; F_box_assoc |
| SLF9-2 | contig630 | 237731 | 58279-57140 | PP719834.1, S2-SLF9 | 92.563 | F-box; F_box_assoc |
| SLF7-2 | contig630 | 237731 | 73143-74276 | ASM2964120v1, SLF7-2 | 91.799 | F-box; F_box_assoc |
| SLF6-2 | contig630 | 237731 | 76459-77598 | ASM2964120v1, SLF6 | 91.674 | F-box; F_box_assoc |
| SLF5-2 | contig630 | 237731 | 87836-86712 | ASM2964120v1, SLF5 | 90.756 | F-box; F_box_assoc |
| SLF4-2 | contig630 | 237731 | 128465-127353 | PP719829.1, S2-SLF4 | 92.098 | F-box; F_box_assoc |
| SLF3-2 | contig630 | 237731 | 158070-156949 | PP719842.1, S30-SLF3 | 92.004 | F-box; F_box_assoc |
| SLF2-3 | contig630 | 237731 | 184327-183203 | PP719841.1, S30-SLF2 | 92.362 | F-box; F_box_assoc |
| SLF1-2 | contig630 | 237731 | 213224-212121 | PB533_SCSK_HAP2, SLF1 | 97.82 | F-box; F_box_assoc |
| S-RNase-1 | contig70 | 1386136 | 303066-303305,303405-303842 | OQ672692.1, S17-RNase | 99.6 | Ribonuclease T2 |
| S-RNase-2 | contig630 | 237731 | 111757-112008,112104-112538 | OQ672694.1, S19-RNase | 100 | Ribonuclease T2 |
Citrus S genes Nucleotide
Citrus S genes Protein