| Analysis Name | Citrus kinokuni Kishu_mikan Assembly & Annotation |
| Sequencing technology | PacBio Sequel II |
| Assembly method | Hifiasm v. 0.16 |
| Release Date | 2023-08-11 |
NCBI BioProject PRJDB16362, PRJDB16363.
Assembly statistics
| Assembly statistics | haplotype 1 | haplotype 2 |
| Genome size | 304.2 Mb | 310.3 Mb |
| Number of chromosomes | 9 | 9 |
| Number of scaffolds | 9 | 9 |
| Scaffold N50 | 33.5 Mb | 32.5 Mb |
| Scaffold L50 | 4 | 4 |
| Number of contigs | 253 | 165 |
| Contig N50 | 14.9 Mb | 9.7 Mb |
| Contig L50 | 8 | 11 |
| Assembly level | Scaffold | Scaffold |
The Citrus kinokuni Kishu_mikan Assembly files are available in FASTA format.
Downloads
| Chromosomes (FASTA file) | GCA_033242385.1_ASM3324238v1_genomic.fna.gz |
| Chromosomes (FASTA file) | GCA_033242405.1_ASM3324240v1_genomic.fna.gzz |
The Citrus kinokuni Kishu_mikan genome gene prediction files are not available.
Downloads
| Genes (GFF3 file) | - |
| CDS sequences (FASTA file) | - |
| Protein sequences (FASTA file) | - |
Functional annotation for the Citrus kinokuni Kishu_mikan is not available.
Downloads
| Domain from InterProScan | - |
Summary
| Query | Scaffold | Size(bp) | Coordinates | BLASTn Hit | BLASTn %ID | Domain |
| SLF13 | BTHL01000007.1 | 33465452 | 5046049-5044973 | PP719853.1, S30-SLF13 | 99 | F-box; F_box_assoc |
| SLF12 | BTHL01000007.1 | 33465452 | 5056925-5058046 | PP719837.1, S2-SLF12 | 100 | F-box; F_box_assoc |
| SLF11 | BTHL01000007.1 | 33465452 | 5061076-5062221 | PP719851.1, S30-SLF11 | 99 | F-box; F_box_assoc |
| SLF10 | BTHL01000007.1 | 33465452 | 5073776-5072631 | PP719835.1, S2-SLF10 | 99 | F-box; F_box_assoc |
| SLF9 | BTHL01000007.1 | 33465452 | 5094976-5093837 | PP719834.1, S2-SLF9 | 74 | F-box; F_box_assoc |
| SLF8 | BTHL01000007.1 | 33465452 | 5098641-5097490 | PP719847.1, S30-SLF8a | 75 | F-box; F_box_assoc |
| SLF7 | BTHL01000007.1 | 33465452 | 5103705-5104835 | PP719832.1, S2-SLF7 | 93 | F-box; F_box_assoc |
| SLF9-2 | BTHL01000007.1 | 33465452 | 5107022-5105883 | PP719834.1, S2-SLF9 | 74 | F-box; F_box_assoc |
| SLF2 | BTHL01000007.1 | 33465452 | 5142588-5143700 | PP719841.1, S30-SLF2 | 88 | F-box; F_box_assoc |
| SLF5 | BTHL01000007.1 | 33465452 | 5156019-5157146 | PP719830.1, S2-SLF5 | 86 | F-box; F_box_assoc |
| SLF4 | BTHL01000007.1 | 33465452 | 5210043-5208928 | PP719843.1, S30-SLF4 | 92 | F-box; F_box_assoc |
| SLF3 | BTHL01000007.1 | 33465452 | 5214081-5212981 | PP719842.1, S30-SLF3 | 95 | F-box; F_box_assoc |
| SLF2-2 | BTHL01000007.1 | 33465452 | 5220082-5218958 | PP719841.1, S30-SLF2 | 96 | F-box; F_box_assoc |
| SLF1 | BTHL01000007.1 | 33465452 | 5240676-5239576 | PP719840.1, S30-SLF1 | 98 | F-box; F_box_assoc |
| S-RNase | BTHL01000007.1 | 33465452 | 5205936-5206178,5206272-5206724 | MN652903.1, S7-RNase | 99 | RNase_T2 |
| SLF13 | BTHM01000007.1 | 32542551 | 943458-942382 | PP719853.1, S30-SLF13 | 98 | F-box; F_box_assoc |
| SLF12 | BTHM01000007.1 | 32542551 | 954805-955926 | PP719837.1, S2-SLF12 | 99 | F-box; F_box_assoc |
| SLF11 | BTHM01000007.1 | 32542551 | 959185-960360 | PP719851.1, S30-SLF11 | 98 | F-box; F_box_assoc |
| SLF10 | BTHM01000007.1 | 32542551 | 962834-961689 | PP719835.1, S2-SLF10 | 99 | F-box; F_box_assoc |
| SLF9 | BTHM01000007.1 | 32542551 | 984361-983222 | PP719834.1, S2-SLF9 | 74 | F-box; F_box_assoc |
| SLF8 | BTHM01000007.1 | 32542551 | 988396-987254 | PP719847.1, S30-SLF8a | 75 | F-box; F_box_assoc |
| SLF7 | BTHM01000007.1 | 32542551 | 1014771-1015901 | PP719832.1, S2-SLF7 | 93 | F-box; F_box_assoc |
| SLF6 | BTHM01000007.1 | 32542551 | 1024575-1025711 | PP719845.1, S30-SLF6 | 90 | F-box; F_box_assoc |
| SLF5 | BTHM01000007.1 | 32542551 | 1076600-1075476 | PP719830.1, S2-SLF5 | 90 | F-box; F_box_assoc |
| SLF4 | BTHM01000007.1 | 32542551 | 1143175-1142054 | PP719843.1, S30-SLF4 | 90 | F-box; F_box_assoc |
| SLF3 | BTHM01000007.1 | 32542551 | 1170047-1168935 | PP719842.1, S30-SLF3 | 90 | F-box; F_box_assoc |
| SLF2 | BTHM01000007.1 | 32542551 | 1204128-1203034 | PP719841.1, S30-SLF2 | 91 | F-box; F_box_assoc |
| S-RNaseψ | BTHM01000007.1 | 32542551 | 1094687-1094451,1094329-1093906 | MN652912.1, Sm-RNase | 99 | - |
Citrus kinokuni Kishu_mikan S genes Nucleotide
Citrus kinokuni Kishu_mikan S genes Protein