Analysis Name | Petunia axillaris subsp. axillaris 'N (cultivar)' Peax403 Assembly & Annotation |
Sequencing technology | PacBio Sequel |
Assembly method | wtdbg2 v. MAY-2020 |
Release Date | 2023-02-20 |
Li, C., Binaghi, M., Pichon, V. et al. Tight genetic linkage of genes causing hybrid necrosis and pollinator isolation between young species. Nat. Plants 9, 420–432 (2023). https://doi.org/10.1038/s41477-023-01354-8.
AbstractThe mechanisms of reproductive isolation that cause phenotypic diversifcation and eventually speciation are a major topic of evolutionary research. Hybrid necrosis is a post-zygotic isolation mechanism in which cell death develops in the absence of pathogens. It is often due to the incompatibility between proteins from two parents. Here we describe a unique case of hybrid necrosis due to an incompatibility between loci on chromosomes 2 and 7 between two pollinator-isolated Petunia species. Typical immune responses as well as endoplasmic reticulum stress responses are induced in the necrotic line. The locus on chromosome 2 encodes ChiA1, a bifunctional GH18 chitinase/lysozyme. The enzymatic activity of ChiA1 is dispensable for the development of necrosis. We propose that the extremely high expression of ChiA1 involves a positive feedback loop between the loci on chromosomes 2 and 7. ChiA1 is tightly linked to major genes involved in the adaptation to diferent pollinators, a form of pre-zygotic isolation. This linkage of pre- and post-zygotic barriers strengthens reproductive isolation and probably contributes to rapid diversifcation and speciation.
Assembly statistics
Genome size | 1.2G |
Number of chromosomes | 7 |
Number of Scaffolds | 341 |
Scaffold L50 | 4 |
Scaffold N50 | 173 Mb |
Number of Contigs | 600 |
Contig L50 | 23 |
Contig N50 | 15.2 Mb |
Assembly level | Chromosome |
The Petunia axillaris subsp. axillaris 'N (cultivar)' Peax403 Assembly file is available in FASTA format.
Downloads
Chromosomes (FASTA file) | Petunia_axillaris_Peax403_genome.fasta.gz |
The Petunia axillaris subsp. axillaris 'N (cultivar)' Peax403 genome gene prediction files are not available.
Downloads
Genes (GFF3 file) | - |
CDS sequences (FASTA file) | - |
Protein sequences (FASTA file) | - |
Functional annotation for the Petunia axillaris subsp. axillaris 'N (cultivar)' Peax403 is not available.
Downloads
Domain from InterProScan | - |
Summary
Query | Chromosome | Size(bp) | Coordinates | BLASTp Hit | BLASTp %ID | Domain |
SLF1-1 | CM049421.1 | 156255816 | 127457386-127458555 | AGL76530, S5-SLF1 | 99 | F-box domain |
SFL1-2 | CM049421.1 | 156255816 | 128296822-128295653 | ADD21612, S1-SLF1 | 99 | F-box domain |
SLF2 | CM049421.1 | 156255816 | 118000713-118001879 | BAJ24857, S19-SLF2 | 95 | F-box domain |
SLF3 | CM049421.1 | 156255816 | 127544332-127545489 | BAJ24858, S5-SLF3 | 98 | F-box domain |
SLF4 | CM049421.1 | 156255816 | 124359456-124360667 | BAJ24865, S7-SLF4 | 94 | F-box domain |
SLF5 | CM049421.1 | 156255816 | 117059536-117060705 | BAJ24871, S7-SLF5 | 95 | F-box domain |
SLF6 | CM049421.1 | 156255816 | 117265699-117264521 | BAJ24881, S19-SLF6 | 96 | F-box domain |
SLF8 | CM049421.1 | 156255816 | 127420965-127422140 | ABX82525, S2-SLF8 | 90 | F-box domain |
SLF10 | CM049421.1 | 156255816 | 136581105-136582244 | BAQ19011, SLF10-S22 | 100 | F-box domain |
SLF11 | CM049421.1 | 156255816 | 122951004-122949847 | BAQ18962, SLF11-S10 | 95 | F-box domain |
SLF12 | CM049421.1 | 156255816 | 127479292-127480473 | AIK66457, S3-SLF12 | 99 | F-box domain |
SLF13 | CM049421.1 | 156255816 | 127633471-127634634 | AIK66461, S2-SLF13 | 98 | F-box domain |
SLF14 | CM049421.1 | 156255816 | 117175082-117176275 | AIK66466, S2-SLF14 | 98 | F-box domain |
SLF15 | CM049421.1 | 156255816 | 127897883-127896690 | BAQ19016, SLF15-S22 | 99 | F-box domain |
SLF16 | CM049421.1 | 156255816 | 126657295-126658455 | AIK66479, S6a-SLF16 | 99 | F-box domain |
SLF18-1 | CM049421.1 | 156255816 | 124745350-124744208 | BAQ19002, S19-FBX2 | 84 | F-box domain |
SLF18-2 | CM049421.1 | 156255816 | 123944057-123942879 | BAQ18968.1, SLF18-S10 | 100 | F-box domain |
SLF19-1 | CM049421.1 | 156255816 | 124930094-124931254 | BAQ19002, S19-FBX2 | 80 | F-box domain |
SLF19-2 | CM049421.1 | 156255816 | 125161084-125162244 | BAQ19002, S19-FBX2 | 80 | F-box domain |
S-RNase | CM049421.1 | 156255816 | 136395439-136395675,136395794-136396225 | AAA60465, S1-RNase | 100 | Ribonuclease T2 family |
Nucleotide
Protein