Description

S. chomatophilum is found from southern Ecuador south through most of Peru. It is one of the most widely distributed and variable wild species in Peru. Its natural habitat is slopes, thickets, woods, and ravines at 8,200 to 13,500 feet (2500 to 4100 m) (Correll 1962).

Whole Genomes

Whole Genome Sequences & Annotations for Solanum chomatophilum

• Solanum chomatophilum PG3005

S genes

Solanum chomatophilum PG3005 S genes

Query	Contig	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF19	atg0039	5992201	2224373-2225488	Solanum lycopersicum SL2.31, SLF19	93.6	F-box domain
SLF18	atg0039	5992201	2251122-2250010	Solanum tuberosum DM8.1, SLF18	96.1	F-box domain
SLF15	atg0041	597128	349538-350797	Solanum tuberosum DM8.1, SLF15	97.2	F-box domain
SLF13	atg0053	1512207	464884-463682	Solanum tuberosum DM8.1, SLF13	98	F-box domain
SLF16Ψ	atg0190	2251862	2239940-2241120	Solanum tuberosum DM8.1, SLF16	98.2	-
SLF9	atg0285	1056659	560234-561376	Solanum tuberosum DM8.1, SLF9	97.5	F-box domain
SLF21	atg0525	1212630	535833-537053	Solanum tuberosum DM8.1, SLF21	96.1	F-box domain
SLF17	hptg0047	4509590	915864-917024	Solanum tuberosum DM8.1, SLF17	96	F-box domain
SLF1Ψ	hptg0047	4509590	3208092-3206911	Solanum pennellii KJ814858.1, SLF1	92.3	-
SLF10Ψ	hptg0056	5797315	278556-279754	Solanum chilense KJ814888.1, SLF10	91.2	-
SLF21-2	hptg0056	5797315	2398425-2399645	Solanum tuberosum DM8.1, SLF21	96.2	F-box domain
SLF20	hptg0056	5797315	2768500-2769666	Solanum tuberosum DM8.1, SLF20	96.8	F-box domain
SLF7	hptg0056	5797315	2785501-2786670	Solanum tuberosum DM8.1, SLF7	97.5	F-box domain
SLF5	hptg0056	5797315	2839567-2840736	Solanum tuberosum DM8.1, SLF5-2	97.6	F-box domain
SLF4	hptg0056	5797315	2980269-2981435	Solanum pimpinellifolium KJ814871.1, SLF4	96	F-box domain
SLF12	hptg0056	5797315	3123909-3122743	Solanum tuberosum DM8.1, SLF12	98.2	F-box domain
SLF5-2	hptg0056	5797315	3163400-3164584	Solanum tuberosum DM8.1, SLF5	97.3	F-box domain
SLF6	hptg0056	5797315	5227986-5229128	Solanum tuberosum DM8.1, SLF6	92.9	F-box domain
S-RNase	hptg0056	5797315	5442969-5443202, 5443289-5443702	Solanum tuberosum MZ561415.1, SRNase-S12	95.2	Ribonuclease T2 family
SLF20-2	hptg0074	3086057	245565-246731	Solanum tuberosum DM8.1, SLF20	96.7	F-box domain
SLF6-2Ψ	hptg0074	3086057	251767-252908	Solanum tuberosum DM8.1, SLF6	92.9	-
SLF7-2	hptg0074	3086057	260379-261542	Solanum tuberosum DM8.1, SLF7	95.6	F-box domain
SLF5-3	hptg0074	3086057	315817-316986	Solanum tuberosum DM8.1, SLF5-2	98.2	F-box domain
SLF4-2	hptg0074	3086057	428403-429560	Solanum pimpinellifolium KJ814871.1, SLF4	96	F-box domain
SLF12-2	hptg0074	3086057	616845-615679	Solanum tuberosum DM8.1, SLF12	98.7	F-box domain
SLF5-4	hptg0074	3086057	643979-645163	Solanum tuberosum DM8.1, SLF5	96.7	F-box domain
SLF17-2	hptg0074	3086057	2256008-2254827	Solanum tuberosum DM8.1, SLF17	97.8	F-box domain
SLF19-2	ptg0002	44596146	29281866-29282981	Solanum tuberosum DM8.1, SLF19	95.9	F-box domain
SLF18-2	ptg0002	44596146	29306161-29305049	Solanum tuberosum DM8.1, SLF18	96.6	F-box domain
SLF13-2	ptg0002	44596146	43420110-43421312	Solanum tuberosum DM8.1, SLF13	98.1	F-box domain
SLF6-3Ψ	ptg0005	8374759	8345362-8344220	Solanum tuberosum DM8.1, SLF6-2	95.7	-
S-RNase-2	ptg0017	2893382	1306912-1307145, 1307232-1307645	Solanum tuberosum MZ561415.1, SRNase-S12	92.7	Ribonuclease T2 family
SLF15-2	ptg0019	15513556	3788638-3789897	Solanum tuberosum DM8.1, SLF15	97.4	F-box domain
SLF16-2Ψ	ptg0019	15513556	5312270-5311090	Solanum tuberosum DM8.1, SLF16	98.2	-

Downloads

The Solanum chomatophilum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_chomatophilum

Publications

Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Genome evolution and diversity of wild and cultivated potatoes. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x.