Description

Solanum habrochaites (syn. Lycopersicon hirsutum), the hairy tomato, is a species of flowering plant in the family Solanaceae, native to Ecuador and Peru. It is considered to be one of the most important sources of genetic variation for crop improvement of the cultivated tomato, Solanum lycopersicum.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum habrochaites

• Solanum habrochaites gwh_assembly LA0407

S genes

Solanum habrochaites gwh_assembly LA0407 S genes

Query	Chr	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	Chr1	109540374	2541084-2539825	Solanum lycopersicum SL2.31, SLF15	96.9	F-box domain
SLF16	Chr1	109540374	3228673-3227492	Solanum lycopersicum SL2.31, SLF16	99	F-box domain
SLF1	Chr1	109540374	54780499-54779330	Solanum peruvianum KJ814846.1, SLF1	95.6	F-box domain
SLF17	Chr1	109540374	55055308-55056474	Solanum peruvianum KU960916.1, SLF17	99.1	F-box domain
SLF14	Chr1	109540374	55870429-55869260	Solanum pennellii BK009220.1, SLF14	98	F-box domain
SLF4	Chr1	109540374	56052192-56051320	Solanum pimpinellifolium KJ814871.1, SLF4	96.5	F-box domain
SLF23	Chr1	109540374	56062526-56063683	Solanum pennellii BK009221.1, SLF23	99.1	F-box domain
S-RNase	Chr1	109540374	57225365-57225595 57225688-57226101	Solanum habrochaites AB072478.1, Sh_hgSRN1	85.6	Ribonuclease T2 family
SLF2	Chr1	109540374	59138023-59136842	Solanum habrochaites KJ814908.1, SLF2-S1	98.1	F-box domain
SLF4-2	Chr1	109540374	59282492-59281326	Solanum pimpinellifolium KJ814871.1, SLF4	96.7	F-box domain
SLF7	Chr1	109540374	59718811-59717642	Solanum habrochaites KJ814923.1, SLF7-S1	98.7	F-box domain
SLF20	Chr1	109540374	59845664-59844498	Solanum peruvianum KU960913.1, SLF20	98.1	F-box domain
SLF10Ψ	Chr1	109540374	60312759-60313988	Solanum pimpinellifolium KJ814876.1, SLF10	97.7	-
SLF9	Chr1	109540374	60547814-60548956	Solanum pimpinellifolium KJ814875.1, SLF9	98.3	F-box domain
SLF21	Chr1	109540374	61601909-61603207	Solanum peruvianum KU960914.1, SLF21	98.6	F-box domain
SLF11	Chr1	109540374	63693780-63694952	Solanum pimpinellifolium KJ814877.1, SLF11	98.6	F-box domain
SLF17-2	Chr1	109540374	64293419-64292238	Solanum lycopersicoides KU960921.1, SLF17	96.3	F-box domain
SLF14-2Ψ	Chr1	109540374	72512834-72514004	Solanum lycopersicum KJ814903.1, SLF14	98.5	-
SLF13	Chr1	109540374	76128658-76129644	Solanum habrochaites KJ814930.1, SLF13	99.2	F-box domain
SLF12	Chr1	109540374	76688997-76687834	Solanum habrochaites KJ814929.1, SLF12	99.5	F-box domain
SLF18	Chr1	109540374	84792432-84793547	Solanum lycopersicum SL2.31, SLF18	98	F-box domain
SLF19	Chr1	109540374	84811087-84809978	Solanum tuberosum DM8.1, SLF19	92.6	F-box domain

Downloads

The Solanum habrochaites S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_habrochaites

Publications

Yu X, Qu M, Shi Y, Hao C, Guo S, Fei Z, Gao L. Chromosome-scale genome assemblies of wild tomato relatives Solanum habrochaites and Solanum galapagense reveal structural variants associated with stress tolerance and terpene biosynthesis. Hortic Res. 2022 Jun 20;9:uhac139. doi: 10.1093/hr/uhac139

Li N, He Q, Wang J, Wang B, Zhao J, Huang S, Yang T, Tang Y, Yang S, Aisimutuola P, Xu R, Hu J, Jia C, Ma K, Li Z, Jiang F, Gao J, Lan H, Zhou Y, Zhang X, Huang S, Fei Z, Wang H, Li H, Yu Q. Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species. Nat Genet. 2023 May;55(5):852-860. doi: 10.1038/s41588-023-01340-y.