Description

Solanum retroflexum, commonly known as umsobo (isiZulu), wonderberry or sunberry, is a historic heirloom fruiting shrub. Both common names are also used for the European black nightshade (Solanum nigrum) in some places, particularly where the latter species has been introduced, so care must be taken to distinguish them. It is sometimes called garden huckleberry, but that properly refers to the species S. scabrum described by Philip Miller.

The plant produces diminutive, dark blue-purple edible fruits that are bland in flavor and often combined with sugar in desserts. Green (unripe) fruits may be poisonous.

Whole Genomes

Whole Genome Sequences & Annotations for Solanum retroflexum

• Solanum retroflexum gwh_assembly PI 688410 01

S genes

Solanum retroflexum gwh_assembly PI 688410 01 S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTn Hit	BLASTn %ID	Domain
SLF15	GWHBKCB00000001	101730500	3381911-3383170	Solanum tuberosum DM8.1, SLF15	90.2	F-box domain
SLF16Ψ	GWHBKCB00000001	101730500	4049901-4048718	Solanum tuberosum DM8.1, SLF16	88.2	-
SLF22Ψ	GWHBKCB00000001	101730500	37808988-37807853	Solanum tuberosum DM8.1, SLF22	87.2	-
SLF21Ψ	GWHBKCB00000001	101730500	47829007-47830220	Solanum tuberosum DM8.1, SLF21	86.7	-
SLF11	GWHBKCB00000001	101730500	49241756-49242922	Solanum tuberosum DM8.1, SLF11	89.3	F-box domain
SLF18	GWHBKCB00000001	101730500	71351651-71352766	Solanum lycopersicum SL2.31, SLF18	88.5	F-box domain
SLF19	GWHBKCB00000001	101730500	71398706-71397609	Solanum tuberosum DM8.1, SLF19	88.5	F-box domain
SLF19-2	GWHBKCB00000001	101730500	71493542-71492445	Solanum tuberosum DM8.1, SLF19	88.4	F-box domain
SLF15-2Ψ	GWHBKCB00000005	90459577	3842668-3841413	Solanum tuberosum DM8.1, SLF15	89.6	-
SLF16-2Ψ	GWHBKCB00000005	90459577	4570108-4568925	Solanum tuberosum DM8.1, SLF16	88.4	-
SLF22-2Ψ	GWHBKCB00000005	90459577	29537317-29536181	Solanum tuberosum DM8.1, SLF22	87.1	-
SLF20Ψ	GWHBKCB00000005	90459577	31944497-31943333	Solanum tuberosum DM8.1, SLF20	87.7	-
SLF7Ψ	GWHBKCB00000005	90459577	36234792-36233621	Solanum tuberosum DM8.1, SLF7	89.0	-
S-RNaseΨ	GWHBKCB00000005	90459577	39150810-39151037, 39151180-39151608	Solanum chacoense AF176533.1, ScS12-RNase	86.5	-
SLF21-2Ψ	GWHBKCB00000005	90459577	43785799-43784586	Solanum tuberosum DM8.1, SLF21	87.1	-
SLF11-2	GWHBKCB00000005	90459577	47821840-47820671	Solanum tuberosum DM8.1, SLF11	89.1	F-box domain
SLF18-2Ψ	GWHBKCB00000005	90459577	63361068-63362186	Solanum tuberosum DM8.1, SLF18	88.1	-
SLF19-3	GWHBKCB00000005	90459577	63398343-63397243	Solanum tuberosum DM8.1, SLF19	90.6	F-box domain
SLF15-3	GWHBKCB00000009	87999500	18978218-18979477	Solanum tuberosum DM8.1, SLF15	89.9	F-box domain
SLF16-3Ψ	GWHBKCB00000009	87999500	19666987-19665804	Solanum tuberosum DM8.1, SLF16	87.8	-
SLF22-3	GWHBKCB00000009	87999500	48491490-48490354	Solanum tuberosum DM8.1, SLF22	87.0	F-box domain
SLF5Ψ	GWHBKCB00000009	87999500	51486393-51487562	Solanum tuberosum DM8.1, SLF5-2	86.4	-
SLF11-3Ψ	GWHBKCB00000009	87999500	59721108-59722277	Solanum tuberosum DM8.1, SLF11	87.3	-
SLF18-3	GWHBKCB00000009	87999500	77542561-77543670	Solanum tuberosum DM8.1, SLF18	88.6	F-box domain
SLF19-4Ψ	GWHBKCB00000009	87999500	77592063-77590962	Solanum tuberosum DM8.1, SLF19	90.4	-

Downloads

The Solanum retroflexum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Solanum_retroflexum

Publications

Wu Y, Li D, Hu Y, Li H, Ramstein GP, Zhou S, Zhang X, Bao Z, Zhang Y, Song B, Zhou Y, Zhou Y, Gagnon E, Särkinen T, Knapp S, Zhang C, Städler T, Buckler ES, Huang S. Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell. 2023 May 25;186(11):2313-2328.e15. doi: 10.1016/j.cell.2023.04.008.