Description

Brassica carinata is a species of flowering plant in the Brassicaceae family. It is referred to by the common names Ethiopian rape or Ethiopian mustard. It is believed to be a hybrid between Brassica nigra and Brassica oleracea. The flowers attract honey bees to collect pollen and nectar.

Whole Genomes

Whole Genome Sequences & Annotations for Brassica carinata

• Brassica carinata PGLv1

S genes

Brassica carinata PGLv1 S genes

Query	Chromosome	Size(bp)	Coordinates	BLASTp Hit	BLASTp %ID
SRK1	Bca_GomB07	78904307	18854762-18856109,18856191-18856301, 18856410-18856573,18856654-18856864, 18856962-18857199,18857278-18857428, 18857516-18857809	SRKb|AB052756.1_prot_BAB40987.1_1	32
SCR1	Bca_GomB07	78904307	19480562-19480631,19480242-19480462	XP_018438641.1	65
SRK2	Bca_GomC06	64278046	52033016-52034333,52036552-52036698, 52036802-52036983,52039167-52039377, 52039469-52039706,52039803-52039953, 52040027-52040344	sp|Q09092|SRK6_BRAOV	65
SCR2	Bca_GomC06	64278046	52017412-52017496,52017129-52017322	BAD29945.1	80

Downloads

The Brassica carinata S gene sequences are available in FASTA format.

CDS and Protein (FASTA file)

S-gene_Brassica_carinata

Publications

Song X, Wei Y, Xiao D, Gong K, Sun P, Ren Y, Yuan J, Wu T, Yang Q, Li X, Nie F, Li N, Feng S, Pei Q, Yu T, Zhang C, Liu T, Wang X, Yang J. Brassica carinata genome characterization clarifies U's triangle model of evolution and polyploidy in Brassica. Plant Physiol. 2021 May 27;186(1):388-406. doi: 10.1093/plphys/kiab048.

Yim WC, Swain ML, Ma D, An H, Bird KA, Curdie DD, Wang S, Ham HD, Luzuriaga-Neira A, Kirkwood JS, Hur M, Solomon JKQ, Harper JF, Kosma DK, Alvarez-Ponce D, Cushman JC, Edger PP, Mason AS, Pires JC, Tang H, Zhang X. The final piece of the Triangle of U: Evolution of the tetraploid Brassica carinata genome. Plant Cell. 2022 Oct 27;34(11):4143-4172. doi: 10.1093/plcell/koac249.

Paritosh K, Rajarammohan S, Yadava SK, Sharma S, Verma R, Mathur S, Mukhopadhyay A, Gupta V, Pradhan AK, Kaur J, Pental D. A chromosome-scale assembly of Brassica carinata (BBCC) accession HC20 containing resistance to multiple pathogens and an early generation assessment of introgressions into B. juncea (AABB). Plant J. 2024 May 9. doi: 10.1111/tpj.16794.