Triticum turgidum

Overview

Genus Triticum
Species turgidum
Common Name Wild emmer (AABB-genome)
Abbreviation T. turgidum
Ploidy Tetraploid
Chromosome Number 2n=4x=28
Genome Size 9.9 Gb
Genome Assemblies 1
Cross Reference NCBI taxon: 4571

Description

Triticum turgidum (with its various subspecies being known as pasta wheat, macaroni wheat and durum wheat) is a species of wheat. It is an annual and grows primarily in temperate areas and is native to countries around the eastern Mediterranean, down to Iran and east to Xinjiang, China.

Whole Genomes

Whole Genome Sequences & Annotations for Triticum turgidum

S genes

Triticum turgidum Svevo S genes

QueryChromosomeSize(bp)CoordinatestBLASTn HittBLASTn %IDDomain
DUF247I-S1LT934111.158526672280061907-80063502LpSDUF247-I_chromosome1DUF247
DUF247I-S2LT934112.1681112512131222758-131224374LpSDUF247-I_chromosome1DUF247
DUF247II-S1LT934111.158526672278697474-78699093LpSDUF247-II_chromosome1DUF247
DUF247II-S2ΨLT934112.1681112512130984358-130984540LpSDUF247-II_chromosome1DUF247
HPS10-S1LT934111.158526672280057717-80057840,
80057946-80058079
LpsS_contig12948-
HPS10-S2LT934112.1681112512130990724-130990827,
130990935-130991061
LpsS_contig11029-
DUF247I-Z1ΨLT934113.1775448786736756013-736756549LrDUF247I-ZDUF247
DUF247I-Z2LT934114.1790338525728194691-728196280LpZDUF247-I_chromosome2DUF247
DUF247II-Z1ΨLT934113.1775448786736759800-736760549LrDUF247II-ZDUF247
DUF247II-Z2LT934114.1790338525728182201-728183874LrDUF247II-ZDUF247
HPS10-Z1LT934113.1775448786736757916-736758060,
736758184-736758293
LpsZ_chromosome2-
HPS10-Z2LT934114.1790338525728191843-728191969,
728192099-728192199
AerianthaHPS10-Z-

Downloads

The Triticum turgidum S gene sequences are available in FASTA format.

CDS and Protein (FASTA file) S-gene_Triticum_turgidum

Publications

Maccaferri M, Harris NS, Twardziok SO, Pasam RK, Gundlach H, Spannagl M, Ormanbekova D, Lux T, Prade VM, Milner SG, Himmelbach A, Mascher M, Bagnaresi P, Faccioli P, Cozzi P, Lauria M, Lazzari B, Stella A, Manconi A, Gnocchi M, Moscatelli M, Avni R, Deek J, Biyiklioglu S, Frascaroli E, Corneti S, Salvi S, Sonnante G, Desiderio F, Marè C, Crosatti C, Mica E, Özkan H, Kilian B, De Vita P, Marone D, Joukhadar R, Mazzucotelli E, Nigro D, Gadaleta A, Chao S, Faris JD, Melo ATO, Pumphrey M, Pecchioni N, Milanesi L, Wiebe K, Ens J, MacLachlan RP, Clarke JM, Sharpe AG, Koh CS, Liang KYH, Taylor GJ, Knox R, Budak H, Mastrangelo AM, Xu SS, Stein N, Hale I, Distelfeld A, Hayden MJ, Tuberosa R, Walkowiak S, Mayer KFX, Ceriotti A, Pozniak CJ, Cattivelli L. Durum wheat genome highlights past domestication signatures and future improvement targets. Nat Genet. 2019 May;51(5):885-895. doi: 10.1038/s41588-019-0381-3.

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