Citrus inodora

Overview

Genus Citrus
Species inodora
Common Name Large-leaf Australian wild lime
Abbreviation C. inodora
Ploidy Diploid
Chromosome Number 2n=2x=18
Genome Size 300 Mb
Genome Assemblies 4
Cross Reference NCBI taxon: 416197

Organism Image

Description

Citrus inodora or Microcitrus inodora, commonly known as Russell River lime or large leaf Australian wild lime, is a tree native to the Bellenden-Ker Range in northern Queensland, Australia.

It grows in lowland tropical rainforest. Much of its native habitat has now been cleared for agricultural use, so the species has become quite rare. There has to date been no commercial use of the fruits.

Citrus inodora is a shrub up to 4 m (13 ft) tall. The fruit is egg-shaped and yellowish-green. Leaves and flowers are essentially odourless, lacking the aromatic oils characteristic of the genus.

Whole Genomes

Whole Genome Sequences & Annotations for Citrus inodora

S genes

Citrus inodora UN-2024b S genes

QueryChrSize(bp)CoordinatesBLASTn HitBLASTn %IDDomain
SLF1CM100387.12873346927556835-27557935PP719840.1, S30-SLF197F-box; F_box_assoc
SLF2aCM100387.12873346927559914-27561038PP719841.1, S30-SLF297F-box; F_box_assoc
SLF3CM100387.12873346927565889-27567010PP719842.1, S30-SLF395F-box; F_box_assoc
SLF4CM100387.12873346927570708-27571823PP719843.1, S30-SLF491F-box; F_box_assoc
SLF5CM100387.12873346927589031-27587904PP719830.1, S2-SLF586F-box; F_box_assoc
SLF2bCM100387.12873346927601981-27600869PP719841.1, S30-SLF288F-box; F_box_assoc
SLF9aψCM100387.12873346927626562-27627700PP719834.1, S2-SLF974-
SLF7CM100387.12873346927629874-27628744PP719832.1, S2-SLF792F-box; F_box_assoc
SLF8CM100387.12873346927632488-27633630PP719847.1, S30-SLF8a75F-box; F_box_assoc
SLF9bCM100387.12873346927636328-27637467PP719834.1, S2-SLF974F-box; F_box_assoc
SLF10CM100387.12873346927657970-27659115PP719835.1, S2-SLF1099F-box; F_box_assoc
SLF11ψCM100387.12873346927661554-27660384PP719851.1, S30-SLF1198-
SLF12CM100387.12873346927667242-27666121PP719837.1, S2-SLF1299F-box; F_box_assoc
S-RNaseCM100387.12873346927574785-27574543,27574449-27573997MN652903.1, S7-RNase98RNase T2
SLF1CM100396.12827736126580397-26581497PP719840.1, S30-SLF197F-box; F_box_assoc
SLF7CM100396.12827736126684648-26683518PP719832.1, S2-SLF792F-box; F_box_assoc
SLF8CM100396.12827736126687262-26688404PP719847.1, S30-SLF8a75F-box; F_box_assoc
SLF9CM100396.12827736126691219-26692358PP719834.1, S2-SLF974F-box; F_box_assoc
SLF10CM100396.12827736126712855-26714000PP719835.1, S2-SLF1099F-box; F_box_assoc
SLF11ψCM100396.12827736126716443-26715269PP719851.1, S30-SLF1198-
SLF12CM100396.12827736126720594-26719473PP719837.1, S2-SLF1299F-box; F_box_assoc
SLF2CM100396.12827736126583485-26584609PP719841.1, S30-SLF294F-box; F_box_assoc
SLF3CM100396.12827736126592374-26593495PP719842.1, S30-SLF391F-box; F_box_assoc
SLF4CM100396.12827736126619294-26620409PP719843.1, S30-SLF490F-box; F_box_assoc
SLF5CM100396.12827736126661252-26660128PP719830.1, S2-SLF588F-box; F_box_assoc
SLF6CM100396.12827736126673712-26672588PP719845.1, S30-SLF691F-box; F_box_assoc

Downloads

The Citrus inodora S gene sequences are available in FASTA format.

CDS and Protein (FASTA file) S-gene_Citrus_inodora

Publications

Nakandala U, Masouleh AK, Smith MW, Furtado A, Mason P, Constantin L, Henry RJ. Haplotype resolved chromosome level genome assembly of Citrus inodora reveals disease resistance and other citrus specific genes. Hortic Res. 2023 Apr 3;10(5):uhad058. doi: 10.1093/hr/uhad058.

© 2023 National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences